Installation

Requirements

It as only been tested on linux but should work on MacOS.

It requires python >= 3.7 (tested 3.7.3 and 3.9.1)

Dependencies of classical python packages:

  • numpy (tested 1.16.4 and 1.19.5)

  • matplotlib (tested 3.1.1 and 3.3.4)

  • pandas (tested 0.25.0 and 1.2.1)

  • scipy (tested 1.3.0 and 1.6.0)

Dependencies of a python package from Jean-Baptiste Delisle dedicated to mcmc:

Installation

You can install it with pip:

$ pip install baredSC

Or with conda:

$ conda create -n baredSC -c bioconda -c conda-forge baredsc