Installation¶
Requirements¶
It as only been tested on linux but should work on MacOS.
It requires python >= 3.7 (tested 3.7.3 and 3.9.1)
Dependencies of classical python packages:
numpy (tested 1.16.4 and 1.19.5)
matplotlib (tested 3.1.1 and 3.3.4)
pandas (tested 0.25.0 and 1.2.1)
scipy (tested 1.3.0 and 1.6.0)
Dependencies of a python package from Jean-Baptiste Delisle dedicated to mcmc:
samsam (above 0.1.2)
Installation¶
You can install it with pip:
$ pip install baredSC
Or with conda:
$ conda create -n baredSC -c bioconda -c conda-forge baredsc